SMTL ID : 4z7u.2 (1 other biounit)

S13 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x NAG- FUC- NAG- FUC: alpha-L-fucopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-FUC-NAG-FUC.1: 4 residues within 4Å: Chain B: N.32, G.33, T.34, E.35 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.34, B:T.34

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: N.121, E.169, W.171 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Petersen, J. et al., Determinants of Gliadin-Specific T Cell Selection in Celiac Disease. J Immunol. (2015)

Release Date

2015-06-03

Peptides

MHC class II HLA-DQ-alpha chain: A
MHC class II HLA-DQ-beta-1: B
T-CELL RECEPTOR, S13 ALPHA CHAIN: C
T-CELL RECEPTOR, S13 BETA CHAIN: D
deamidated DQ8-glia-alpha1 peptide: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
E

D
F

E
I

MHC class II HLA-DQ-alpha chain

MHC class II HLA-DQ-beta-1

T-CELL RECEPTOR, S13 ALPHA CHAIN

T-CELL RECEPTOR, S13 BETA CHAIN

deamidated DQ8-glia-alpha1 peptide

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