SMTL ID : 4z7w.2 (1 other biounit)

T316 complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.89 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x NAG- NAG- MAN- MAN- FUC- FUC: alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN-MAN-FUC-FUC.1: 1 residues within 4Å: Chain A: N.81 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: V.119, N.121, E.169, W.171 No protein-ligand interaction detected (PLIP)

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain D: E.162, V.163, H.164, S.165 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:E.162, D:H.164, D:S.165, D:S.165

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Petersen, J. et al., Determinants of Gliadin-Specific T Cell Selection in Celiac Disease. J Immunol. (2015)

Release Date

2015-06-03

Peptides

MHC class II HLA-DQ-alpha chain: A
MHC class II HLA-DQ-beta-1: B
T-CELL RECEPTOR, T316 ALPHA CHAIN: C
T-CELL RECEPTOR, T316 BETA CHAIN: D
DQ8-glia-alpha1: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
E

D
F

E
I

MHC class II HLA-DQ-alpha chain

MHC class II HLA-DQ-beta-1

T-CELL RECEPTOR, T316 ALPHA CHAIN

T-CELL RECEPTOR, T316 BETA CHAIN

DQ8-glia-alpha1

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