SMTL ID : 4z7v.1 (1 other biounit)

L3-12 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x NAG- NAG- MAN- MAN- FUC- FUC: alpha-D-mannopyranose-(1-4)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN-MAN-FUC-FUC.1: 3 residues within 4Å: Chain B: N.32, T.34, E.35 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.34, B:T.34

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: V.119, N.121, E.169, W.171 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Petersen, J. et al., Determinants of Gliadin-Specific T Cell Selection in Celiac Disease. J Immunol. (2015)

Release Date

2015-06-03

Peptides

MHC class II HLA-DQ-alpha chain: A
MHC class II HLA-DQ-beta-1: B
T-CELL RECEPTOR, L3-12 ALPHA CHAIN: C
T-CELL RECEPTOR, L3-12 BETA CHAIN: D
deamidated DQ8-glia-alpha1 peptide: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
G

D
H

E
J

MHC class II HLA-DQ-alpha chain

MHC class II HLA-DQ-beta-1

T-CELL RECEPTOR, L3-12 ALPHA CHAIN

T-CELL RECEPTOR, L3-12 BETA CHAIN

deamidated DQ8-glia-alpha1 peptide

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