SMTL ID : 4z7v.2 (1 other biounit)

L3-12 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x NAG- FUC- NAG- FUC: alpha-L-fucopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-FUC-NAG-FUC.1: 4 residues within 4Å: Chain B: N.32, G.33, T.34, E.35 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.34, B:T.34, B:T.34, B:E.35

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: V.119, N.121, E.169, W.171 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Petersen, J. et al., Determinants of Gliadin-Specific T Cell Selection in Celiac Disease. J Immunol. (2015)

Release Date

2015-06-03

Peptides

MHC class II HLA-DQ-alpha chain: A
MHC class II HLA-DQ-beta-1: B
T-CELL RECEPTOR, L3-12 ALPHA CHAIN: C
T-CELL RECEPTOR, L3-12 BETA CHAIN: D
deamidated DQ8-glia-alpha1 peptide: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
E

D
F

E
I

MHC class II HLA-DQ-alpha chain

MHC class II HLA-DQ-beta-1

T-CELL RECEPTOR, L3-12 ALPHA CHAIN

T-CELL RECEPTOR, L3-12 BETA CHAIN

deamidated DQ8-glia-alpha1 peptide

Related Entries With Identical Sequence