SMTL ID : 4za0.1

Structure of Human Enolase 2 in complex with Phosphonoacetohydroxamate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

homo-dimer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 7 residues within 4Å: Chain A: Q.166, D.245, E.293, D.318, K.343, K.394 Ligands: PAH.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.245, A:E.293, A:D.318, H2O.2 MG.2: 5 residues within 4Å: Chain A: S.40, D.318, D.319, K.343 Ligands: PAH.3 5 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: A:S.40, A:S.40, H2O.2, H2O.4, PAH.3 MG.4: 7 residues within 4Å: Chain B: Q.166, D.245, E.293, D.294, D.318, K.394 Ligands: PAH.6 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.245, B:E.293, B:D.318, H2O.10 MG.5: 4 residues within 4Å: Chain B: S.40, D.318, K.343 Ligands: PAH.6 5 PLIP interactions: 2 interactions with chain B, 1 Ligand-Ligand interactions, 2 Ligand-Water interactions Metal complexes: B:S.40, B:S.40, PAH.6, H2O.10, H2O.13

2 x PAH: PHOSPHONOACETOHYDROXAMIC ACID(Non-covalent)

PAH.3: 16 residues within 4Å: Chain A: G.38, A.39, S.40, Q.166, E.167, E.210, D.245, E.293, D.318, L.341, K.343, R.372, S.373, K.394 Ligands: MG.1, MG.2 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:A.39, A:S.40, A:Q.166, A:K.343, A:R.372, A:S.373, A:S.373, A:K.394 Water bridges: A:E.167, A:E.167, A:D.318, A:D.318, A:D.318, A:D.318, A:S.373 PAH.6: 16 residues within 4Å: Chain B: G.38, A.39, S.40, Q.166, E.167, E.210, D.245, E.293, D.318, L.341, K.343, R.372, S.373, K.394 Ligands: MG.4, MG.5 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:A.39, B:S.40, B:Q.166, B:K.343, B:R.372, B:S.373, B:S.373, B:K.394 Water bridges: B:E.45, B:E.167, B:E.167, B:D.318, B:D.318, B:D.318, B:D.318, B:Q.346, B:S.373

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leonard, P.G. et al., SF2312 is a natural phosphonate inhibitor of enolase. Nat.Chem.Biol. (2016)

Release Date

2016-04-13

Peptides

Gamma-enolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Gamma-enolase

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