SMTL ID : 5eu9.4 (3 other biounits)

Structure of Human Enolase 2 in complex with ((3S,5S)-1,5-dihydroxy-3-methyl-2-oxopyrrolidin-3-yl)phosphonic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain A: D.245, E.293, D.318, K.343, K.394 Ligands: 5TX.4 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.245, A:E.293, A:D.318, H2O.2 MG.2: 2 residues within 4Å: Chain A: S.40 Ligands: 5TX.4 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.40, A:S.40, H2O.2, H2O.3 MG.5: 6 residues within 4Å: Chain B: D.245, E.293, D.318, K.343, K.394 Ligands: 5TX.8 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.245, B:E.293, B:D.318, H2O.12 MG.6: 2 residues within 4Å: Chain B: S.40 Ligands: 5TX.8 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:S.40, B:S.40, H2O.14, H2O.17

2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.3: 3 residues within 4Å: Chain A: K.5, W.7, Y.25 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.5 PGE.7: 3 residues within 4Å: Chain B: K.5, W.7, Y.25 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.5

2 x 5TX: ((3S,5S)-1,5-dihydroxy-3-methyl-2-oxopyrrolidin-3-yl)phosphonic acid(Non-covalent)

5TX.4: 17 residues within 4Å: Chain A: G.38, A.39, S.40, Q.166, E.167, E.210, D.245, E.293, D.318, L.341, K.343, H.371, R.372, S.373, K.394 Ligands: MG.1, MG.2 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:A.39, A:S.40, A:K.343, A:H.371, A:R.372, A:S.373, A:K.394 Water bridges: A:N.151, A:D.294, A:D.318, A:D.318 5TX.8: 16 residues within 4Å: Chain B: G.38, A.39, S.40, Q.166, E.167, D.245, E.293, D.318, L.341, K.343, H.371, R.372, S.373, K.394 Ligands: MG.5, MG.6 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:A.39, B:S.40, B:Q.166, B:K.343, B:K.343, B:H.371, B:R.372, B:S.373, B:K.394 Water bridges: B:E.45, B:E.45, B:N.151

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leonard, P.G. et al., SF2312, a natural phosphonate inhibitor of Enolase. To be Published

Release Date

2016-11-23

Peptides

Gamma-enolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

Gamma-enolase

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