SMTL ID : 4zcw.1

Structure of Human Enolase 2 in complex with SF2312

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

homo-dimer

Ligands

2 x 4NG: [(3S,5S)-1,5-dihydroxy-2-oxopyrrolidin-3-yl]phosphonic acid(Non-covalent)

4NG.1: 18 residues within 4Å: Chain A: G.38, A.39, S.40, T.41, Q.166, E.167, E.210, D.245, E.293, D.318, L.341, K.343, H.371, R.372, S.373, K.394 Ligands: MG.2, MG.3 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:A.39, A:S.40, A:K.343, A:K.343, A:H.371, A:R.372, A:S.373, A:S.373, A:K.394 Water bridges: A:N.151, A:D.294 4NG.4: 18 residues within 4Å: Chain B: G.38, A.39, S.40, T.41, Q.166, E.167, E.210, D.245, E.293, D.318, L.341, K.343, H.371, R.372, S.373, K.394 Ligands: MG.5, MG.6 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:A.39, B:S.40, B:Q.166, B:K.343, B:H.371, B:R.372, B:S.373, B:K.394 Water bridges: B:N.151, B:Q.346

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 6 residues within 4Å: Chain A: D.245, E.293, D.318, K.343, K.394 Ligands: 4NG.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.245, A:E.293, A:D.318, H2O.1 MG.3: 3 residues within 4Å: Chain A: S.40, D.318 Ligands: 4NG.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.40, A:S.40, H2O.2, H2O.4 MG.5: 3 residues within 4Å: Chain B: S.40, D.318 Ligands: 4NG.4 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:S.40, B:S.40, H2O.16, H2O.17 MG.6: 6 residues within 4Å: Chain B: D.245, E.293, D.318, K.343, K.394 Ligands: 4NG.4 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.245, B:E.293, B:D.318, H2O.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leonard, P.G. et al., SF2312 is a natural phosphonate inhibitor of enolase. Nat.Chem.Biol. (2016)

Release Date

2016-07-20

Peptides

Gamma-enolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Gamma-enolase

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