SMTL ID : 5idz.1

Structure of Human Enolase 2 in complex with (S)-(1-hydroxy-2-oxopiperidin-3-yl)phosphonate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.63 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: D.245, E.293, D.318, K.394 Ligands: 6BM.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.245, A:E.293, A:D.318, H2O.1 MG.4: 6 residues within 4Å: Chain B: Q.166, D.245, E.293, D.318, K.394 Ligands: 6BM.5 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.245, B:E.293, B:D.318, H2O.5

2 x 6BM: [(3S)-1-hydroxy-2-oxopiperidin-3-yl]phosphonic acid(Non-covalent)

6BM.2: 15 residues within 4Å: Chain A: G.38, A.39, Q.166, E.167, D.245, E.293, D.318, L.341, K.343, S.370, H.371, R.372, S.373, K.394 Ligands: MG.1 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:A.39, A:Q.166, A:K.343, A:S.370, A:S.370, A:R.372, A:S.373, A:S.373, A:K.394 6BM.5: 15 residues within 4Å: Chain B: G.38, A.39, Q.166, E.167, D.245, E.293, D.318, L.341, K.343, S.370, H.371, R.372, S.373, K.394 Ligands: MG.4 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:A.39, B:K.343, B:S.370, B:S.370, B:R.372, B:S.373, B:S.373, B:K.394

2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.3: 3 residues within 4Å: Chain A: K.5, W.7, Y.25 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.4, A:K.5 PGE.6: 3 residues within 4Å: Chain B: K.5, W.7, Y.25 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, Y.H. et al., Pomhex, a cell-permeable Enolase inhibitor for Collateral Lethality targeting of ENO1-deleted Glioblastoma. To Be Published

Release Date

2017-02-22

Peptides

Gamma-enolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Gamma-enolase

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