SMTL ID : 5age.1

CRYSTAL STRUCTURE OF LEISHMANIA MAJOR N-MYRISTOYLTRANSFERASE (NMT) WITH BOUND MYRISTOYL-COA AND A BENZOMORPHOLINONE LIGAND

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x M9M: 4-[(5-methyl-1,2-oxazol-3-yl)methyl]-7-[4-(1-methylpiperidin-4-yl)butyl]-2H-1,4-benzoxazin-3(4H)-one(Non-covalent)

M9M.1: 21 residues within 4Å: Chain A: Y.97, V.98, E.99, D.100, F.105, R.106, F.107, Y.109, N.184, T.220, A.221, G.222, Y.234, H.236, F.249, S.347, Y.362, N.393, M.437, L.438 Ligands: MYA.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.98, A:F.107, A:Y.234 Hydrogen bonds: A:S.347, A:N.393 Water bridges: A:N.184 pi-Stacking: A:Y.234

1 x MYA: TETRADECANOYL-COA(Non-covalent)

MYA.2: 34 residues within 4Å: Chain A: H.29, A.30, F.31, W.32, N.96, Y.97, V.98, I.183, N.184, F.185, L.186, C.187, V.188, R.193, E.194, K.195, R.196, L.197, A.198, P.199, I.202, T.206, V.209, N.210, V.214, W.215, Q.216, A.217, Y.219, T.220, A.221, L.225, Y.421 Ligands: M9M.1 37 PLIP interactions: 37 interactions with chain A Hydrophobic interactions: A:W.32, A:W.32, A:Y.97, A:V.98, A:I.183, A:I.183, A:L.186, A:L.186, A:V.188, A:A.198, A:I.202, A:I.202, A:V.209, A:A.217, A:Y.219, A:Y.219, A:Y.219, A:Y.421 Hydrogen bonds: A:A.30, A:F.31, A:W.32, A:Y.97, A:F.185, A:L.186, A:L.186, A:V.188, A:R.193, A:R.193, A:E.194, A:R.196, A:L.197, A:A.198 Water bridges: A:K.195, A:K.195 Salt bridges: A:H.29, A:R.196, A:R.196

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Spinks, D. et al., Development of Small-Molecule Trypanosoma Brucei N-Myristoyltransferase Inhibitors: Discovery and Optimisation of a Novel Binding Mode. Chemmedchem (2015)

Release Date

2015-10-07

Peptides

GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE

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