5av8.1 | SWISS-MODEL Template Library

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SMTL ID : 5av8.1

human nucleosome core particle

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-2-2-2-2-mer

Ligands

14 x MN: MANGANESE (II) ION(Non-covalent)(Non-functional Binders)

MN.1:	1 residues within 4Å: Chain E: D.81 2 PLIP interactions: 1 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:D.81, H₂O.7
MN.2:	1 residues within 4Å: Chain I: T.87 No protein-ligand interaction detected (PLIP)
MN.3:	1 residues within 4Å: Chain I: G.122 No protein-ligand interaction detected (PLIP)
MN.4:	1 residues within 4Å: Chain I: G.135 No protein-ligand interaction detected (PLIP)
MN.5:	1 residues within 4Å: Chain I: G.101 No protein-ligand interaction detected (PLIP)
MN.6:	1 residues within 4Å: Chain I: G.79 No protein-ligand interaction detected (PLIP)
MN.7:	2 residues within 4Å: Chain I: G.71, G.72 No protein-ligand interaction detected (PLIP)
MN.8:	2 residues within 4Å: Chain I: G.39, G.40 No protein-ligand interaction detected (PLIP)
MN.9:	1 residues within 4Å: Chain J: G.135 No protein-ligand interaction detected (PLIP)
MN.10:	1 residues within 4Å: Chain J: G.101 No protein-ligand interaction detected (PLIP)
MN.11:	1 residues within 4Å: Chain J: G.71 No protein-ligand interaction detected (PLIP)
MN.12:	1 residues within 4Å: Chain J: G.122 No protein-ligand interaction detected (PLIP)
MN.13:	2 residues within 4Å: Chain J: G.39, G.40 No protein-ligand interaction detected (PLIP)
MN.14:	1 residues within 4Å: Chain J: G.79 No protein-ligand interaction detected (PLIP)

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Wakamori, M. et al., Intra- and inter-nucleosomal interactions of the histone H4 tail revealed with a human nucleosome core particle with genetically-incorporated H4 tetra-acetylation. Sci Rep (2015)

Release Date

2015-12-23

Peptides

Histone H3.1: AE
Histone H4: BF
Histone H2A type 1-B/E: CG
Histone H2B type 1-J: DH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

G
G

D
D

H
H

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Histone H3.1

Toggle Identical (AE)

Histone H4

Histone H2A type 1-B/E

Histone H2B type 1-J

Related Entries With Identical Sequence

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