5b0y.1 | SWISS-MODEL Template Library

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SMTL ID : 5b0y.1

Crystal structure of the nucleosome containing histone H3 with the crotonylated lysine 122

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.56 Å

Oligo State

hetero-2-2-2-2-mer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1:	6 residues within 4Å: Chain C: G.48, A.49, G.50, A.51 Chain D: T.94, S.95 Ligand excluded by PLIP
CL.3:	6 residues within 4Å: Chain G: G.48, A.49, G.50, A.51 Chain H: T.94, S.95 Ligand excluded by PLIP

8 x MN: MANGANESE (II) ION(Non-covalent)(Non-functional Binders)

MN.2:	1 residues within 4Å: Chain E: D.78 1 PLIP interactions: 1 interactions with chain E Metal complexes: E:D.78
MN.4:	2 residues within 4Å: Chain I: G.68 Chain J: C.79 No protein-ligand interaction detected (PLIP)
MN.5:	2 residues within 4Å: Chain I: A.133, G.134 No protein-ligand interaction detected (PLIP)
MN.6:	1 residues within 4Å: Chain I: G.121 No protein-ligand interaction detected (PLIP)
MN.7:	2 residues within 4Å: Chain J: G.39, G.40 No protein-ligand interaction detected (PLIP)
MN.8:	1 residues within 4Å: Chain J: G.134 No protein-ligand interaction detected (PLIP)
MN.9:	1 residues within 4Å: Chain J: G.121 No protein-ligand interaction detected (PLIP)
MN.10:	1 residues within 4Å: Chain J: G.71 No protein-ligand interaction detected (PLIP)

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Suzuki, Y. et al., Crystal structure of the nucleosome containing histone H3 with crotonylated lysine 122. Biochem.Biophys.Res.Commun. (2016)

Release Date

2016-01-27

Peptides

Histone H3.2: AE
Histone H4: BF
Histone H2A type 1-B/E: CG
Histone H2B type 1-J: DH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

G
G

D
D

H
H

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Histone H3.2

Histone H4

Histone H2A type 1-B/E

Histone H2B type 1-J

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