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SMTL ID : 5b0z.1

The crystal structure of the nucleosome containing H3.2, at 1.98 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

hetero-2-2-2-2-mer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1:	3 residues within 4Å: Chain A: M.124, P.125, K.126 Ligand excluded by PLIP
CL.2:	6 residues within 4Å: Chain C: G.48, A.49, G.50, A.51 Chain D: T.94, S.95 Ligand excluded by PLIP
CL.4:	3 residues within 4Å: Chain E: M.124, P.125, K.126 Ligand excluded by PLIP
CL.5:	6 residues within 4Å: Chain G: G.48, A.49, G.50, A.51 Chain H: T.94, S.95 Ligand excluded by PLIP

3 x MN: MANGANESE (II) ION(Non-covalent)(Non-functional Binders)

MN.3:	1 residues within 4Å: Chain E: D.81 2 PLIP interactions: 1 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:D.81, H₂O.6
MN.6:	1 residues within 4Å: Chain I: G.121 No protein-ligand interaction detected (PLIP)
MN.7:	3 residues within 4Å: Chain I: C.107 Chain J: G.39, G.40 No protein-ligand interaction detected (PLIP)

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Suzuki, Y. et al., Crystal structure of the nucleosome containing histone H3 with crotonylated lysine 122. Biochem.Biophys.Res.Commun. (2016)

Release Date

2016-01-27

Peptides

Histone H3.2: AE
Histone H4: BF
Histone H2A type 1-B/E: CG
Histone H2B type 1-J: DH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

G
G

D
D

H
H

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Histone H3.2

Histone H4

Histone H2A type 1-B/E

Histone H2B type 1-J

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