SMTL ID : 5b2i.1

Human nucleosome containing CpG unmethylated DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-2-2-2-2-mer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)(Non-functional Binders)

MN.1: 2 residues within 4Å: Chain E: D.81 Chain F: L.26 2 PLIP interactions: 2 interactions with chain E Metal complexes: E:D.81, E:D.81 MN.2: 2 residues within 4Å: Chain I: A.99, G.100 No protein-ligand interaction detected (PLIP) MN.3: 2 residues within 4Å: Chain J: G.71, A.72 No protein-ligand interaction detected (PLIP) MN.4: 2 residues within 4Å: Chain J: T.120, G.121 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fujii, Y. et al., Crystal structure of human nucleosome core particle containing enzymatically introduced CpG methylation. Febs Open Bio (2016)

Release Date

2016-06-15

Peptides

Histone H3.1: AE
Histone H4: BF
Histone H2A type 1-B/E: CG
Histone H2B type 1-J: DH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

G
G

D
D

H
H

Histone H3.1

Histone H4

Histone H2A type 1-B/E

Histone H2B type 1-J

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