5b32.1 | SWISS-MODEL Template Library

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SMTL ID : 5b32.1

The crystal structure of the heterotypic H2AZ/H2A nucleosome with H3.3.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

hetero-2-2-1-2-1-mer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1:	3 residues within 4Å: Chain A: M.124, P.125, K.126 Ligand excluded by PLIP
CL.2:	7 residues within 4Å: Chain C: G.48, A.49, G.50, A.51 Chain D: T.94, S.95 Chain J: T.112 Ligand excluded by PLIP
CL.5:	3 residues within 4Å: Chain E: M.124, P.125, K.126 Ligand excluded by PLIP
CL.6:	6 residues within 4Å: Chain G: G.51, A.52, T.53, A.54 Chain H: T.94, S.95 Ligand excluded by PLIP

10 x MN: MANGANESE (II) ION(Non-covalent)(Non-functional Binders)

MN.3:	2 residues within 4Å: Chain C: E.68 Chain D: V.52 3 PLIP interactions: 1 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:V.52, H₂O.1, H₂O.1
MN.4:	1 residues within 4Å: Chain E: D.81 3 PLIP interactions: 1 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:D.81, H₂O.2, H₂O.2
MN.7:	1 residues within 4Å: Chain I: A.27 No protein-ligand interaction detected (PLIP)
MN.8:	3 residues within 4Å: Chain I: G.68 Chain J: G.78, C.79 No protein-ligand interaction detected (PLIP)
MN.9:	0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)
MN.10:	1 residues within 4Å: Chain I: G.121 No protein-ligand interaction detected (PLIP)
MN.11:	1 residues within 4Å: Chain J: G.134 No protein-ligand interaction detected (PLIP)
MN.12:	1 residues within 4Å: Chain J: G.121 No protein-ligand interaction detected (PLIP)
MN.13:	2 residues within 4Å: Chain J: G.39, G.40 No protein-ligand interaction detected (PLIP)
MN.14:	1 residues within 4Å: Chain J: G.71 No protein-ligand interaction detected (PLIP)

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Horikoshi, N. et al., Crystal structures of heterotypic nucleosomes containing histones H2A.Z and H2A. Open Biology (2016)

Release Date

2016-08-03

Peptides

Histone H3.3: AE
Histone H4: BF
Histone H2A type 1-B/E: C
Histone H2B type 1-J: DH
Histone H2A.Z: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

D
D

H
H

G
G

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Histone H3.3

Histone H4

Histone H2A type 1-B/E

Histone H2B type 1-J

Histone H2A.Z

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