SMTL ID : 5byk.2 (1 other biounit)

Schistosoma mansoni (Blood Fluke) Sulfotransferase/S-oxamniquine Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.28 Å

Oligo State

homo-dimer

Ligands

2 x A3P: ADENOSINE-3'-5'-DIPHOSPHATE(Non-covalent)

A3P.1: 17 residues within 4Å: Chain A: P.18, R.19, T.20, G.21, T.22, K.23, S.24, R.117, S.125, L.205, Y.226, P.227, C.228, V.229, N.230, S.231, H.232 25 PLIP interactions: 25 interactions with chain A Hydrogen bonds: A:R.19, A:T.20, A:G.21, A:T.22, A:T.22, A:K.23, A:S.24, A:S.125, A:P.227, A:V.229, A:N.230, A:H.232 Water bridges: A:R.19, A:S.24, A:S.24, A:R.117, A:R.117, A:R.117, A:G.206, A:G.206, A:H.232 Salt bridges: A:R.19, A:R.19, A:R.117, A:H.232 A3P.4: 17 residues within 4Å: Chain B: P.18, R.19, T.20, G.21, T.22, K.23, S.24, R.117, S.125, L.205, Y.226, P.227, C.228, V.229, N.230, S.231, H.232 25 PLIP interactions: 25 interactions with chain B Hydrogen bonds: B:R.19, B:T.20, B:G.21, B:T.22, B:T.22, B:K.23, B:S.24, B:S.125, B:P.227, B:V.229, B:N.230, B:H.232 Water bridges: B:R.19, B:S.24, B:S.24, B:R.117, B:R.117, B:R.117, B:G.206, B:G.206, B:H.232 Salt bridges: B:R.19, B:R.19, B:R.117, B:H.232

2 x OAQ: {(2S)-7-nitro-2-[(propan-2-ylamino)methyl]-1,2,3,4-tetrahydroquinolin-6-yl}methanol(Non-covalent)

OAQ.2: 14 residues within 4Å: Chain A: P.18, H.39, M.40, I.44, D.93, L.94, V.129, V.130, G.145, D.146, L.149, F.155, T.159, T.239 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:M.40, A:I.44, A:V.129, A:V.130, A:L.149, A:F.155 Hydrogen bonds: A:D.93, A:T.159 Water bridges: A:V.129 OAQ.5: 14 residues within 4Å: Chain B: P.18, H.39, M.40, I.44, D.93, L.94, V.129, V.130, G.145, D.146, L.149, F.155, T.159, T.239 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:M.40, B:I.44, B:V.129, B:V.130, B:L.149, B:F.155 Hydrogen bonds: B:D.93, B:T.159 Water bridges: B:V.129

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 1 residues within 4Å: Chain A: I.259 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.259 Water bridges: A:K.23, A:K.23 NA.6: 1 residues within 4Å: Chain B: I.259 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:I.259 Water bridges: B:K.23, B:K.23

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Taylor, A.B. et al., Structural and Functional Characterization of the Enantiomers of the Antischistosomal Drug Oxamniquine. Plos Negl Trop Dis (2015)

Release Date

2015-09-30

Peptides

Sulfotransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Sulfotransferase

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