SMTL ID : 6bdq.2 (1 other biounit)

Schistosoma mansoni (Blood Fluke) Sulfotransferase/CIDD-0000074 (Compound 10a) Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

homo-dimer

Ligands

2 x A3P: ADENOSINE-3'-5'-DIPHOSPHATE(Non-covalent)

A3P.1: 19 residues within 4Å: Chain A: P.18, R.19, T.20, G.21, T.22, K.23, S.24, R.117, S.125, L.205, G.206, Y.226, P.227, C.228, V.229, N.230, S.231, H.232 Ligands: DE7.2 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:R.19, A:T.20, A:G.21, A:T.22, A:T.22, A:K.23, A:S.24, A:S.125, A:P.227, A:V.229, A:N.230, A:H.232 Water bridges: A:T.22, A:S.24, A:S.24, A:H.232 Salt bridges: A:R.19, A:R.19, A:R.117, A:H.232 A3P.3: 19 residues within 4Å: Chain B: P.18, R.19, T.20, G.21, T.22, K.23, S.24, R.117, S.125, L.205, G.206, Y.226, P.227, C.228, V.229, N.230, S.231, H.232 Ligands: DE7.4 20 PLIP interactions: 20 interactions with chain B Hydrogen bonds: B:R.19, B:T.20, B:G.21, B:T.22, B:T.22, B:K.23, B:S.24, B:S.125, B:P.227, B:V.229, B:N.230, B:H.232 Water bridges: B:T.22, B:S.24, B:S.24, B:H.232 Salt bridges: B:R.19, B:R.19, B:R.117, B:H.232

2 x DE7: (2-nitro-4-{[(3S)-piperidin-3-yl]amino}phenyl)methanol(Non-covalent)

DE7.2: 16 residues within 4Å: Chain A: R.19, H.39, M.40, F.41, I.44, D.93, V.129, V.130, I.142, D.146, L.149, F.155, N.230, M.235, T.239 Ligands: A3P.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.44, A:V.129, A:V.130, A:L.149, A:F.155 Hydrogen bonds: A:D.93, A:T.239 DE7.4: 16 residues within 4Å: Chain B: R.19, H.39, M.40, F.41, I.44, D.93, V.129, V.130, I.142, D.146, L.149, F.155, N.230, M.235, T.239 Ligands: A3P.3 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:I.44, B:V.129, B:V.130, B:L.149, B:F.155 Hydrogen bonds: B:D.93, B:T.239

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rugel, A. et al., Design, Synthesis, and Characterization of Novel Small Molecules as Broad Range Antischistosomal Agents. ACS Med Chem Lett (2018)

Release Date

2018-10-03

Peptides

Sulfotransferase oxamniquine resistance protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Sulfotransferase oxamniquine resistance protein

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