SMTL ID : 6bds.2 (1 other biounit)

Schistosoma mansoni (Blood Fluke) Sulfotransferase/CIDD-0000204 (Compound 11f) Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

homo-dimer

Ligands

2 x A3P: ADENOSINE-3'-5'-DIPHOSPHATE(Non-covalent)

A3P.1: 19 residues within 4Å: Chain A: P.18, R.19, T.20, G.21, T.22, K.23, S.24, R.117, S.125, L.205, G.206, Y.226, P.227, C.228, V.229, N.230, S.231, H.232 Ligands: DJ4.2 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:R.19, A:T.20, A:G.21, A:T.22, A:T.22, A:T.22, A:K.23, A:S.24, A:S.125, A:G.206, A:P.227, A:V.229, A:N.230, A:H.232 Water bridges: A:S.24, A:S.24, A:R.117, A:G.208 Salt bridges: A:R.19, A:R.19, A:R.117, A:H.232 A3P.4: 19 residues within 4Å: Chain B: P.18, R.19, T.20, G.21, T.22, K.23, S.24, R.117, S.125, L.205, G.206, Y.226, P.227, C.228, V.229, N.230, S.231, H.232 Ligands: DJ4.5 22 PLIP interactions: 22 interactions with chain B Hydrogen bonds: B:R.19, B:T.20, B:G.21, B:T.22, B:T.22, B:T.22, B:K.23, B:S.24, B:S.125, B:G.206, B:P.227, B:V.229, B:N.230, B:H.232 Water bridges: B:S.24, B:S.24, B:R.117, B:G.208 Salt bridges: B:R.19, B:R.19, B:R.117, B:H.232

4 x DJ4: (2-nitro-4-{[(3S)-1-{[4-(trifluoromethyl)phenyl]methyl}pyrrolidin-3-yl]amino}phenyl)methanol(Non-covalent)

DJ4.2: 18 residues within 4Å: Chain A: P.18, R.19, H.39, M.40, F.41, I.44, F.45, D.93, V.129, V.130, I.142, D.146, L.149, F.155, T.159, M.235, L.238 Ligands: A3P.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.41, A:V.130, A:I.142, A:L.149, A:F.155, A:L.238 Hydrogen bonds: A:H.39 Salt bridges: A:D.146 DJ4.3: 8 residues within 4Å: Chain A: P.67, P.68, L.70, Y.78, N.105, I.106, P.108 Chain B: K.214 No protein-ligand interaction detected (PLIP) DJ4.5: 18 residues within 4Å: Chain B: P.18, R.19, H.39, M.40, F.41, I.44, F.45, D.93, V.129, V.130, I.142, D.146, L.149, F.155, T.159, M.235, L.238 Ligands: A3P.4 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:F.41, B:V.130, B:I.142, B:L.149, B:F.155, B:L.238 Hydrogen bonds: B:H.39 Salt bridges: B:D.146 DJ4.6: 8 residues within 4Å: Chain A: K.214 Chain B: P.67, P.68, L.70, Y.78, N.105, I.106, P.108 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rugel, A. et al., Design, Synthesis, and Characterization of Novel Small Molecules as Broad Range Antischistosomal Agents. ACS Med Chem Lett (2018)

Release Date

2018-10-03

Peptides

Sulfotransferase oxamniquine resistance protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Sulfotransferase oxamniquine resistance protein

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