- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 3 x 12P: DODECAETHYLENE GLYCOL(Non-covalent)
- 6 x NA: SODIUM ION(Non-functional Binders)
NA.2: 3 residues within 4Å:- Chain A: S.54
- Chain B: S.54
- Ligands: NA.3
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:S.54
NA.3: 1 residues within 4Å:- Ligands: NA.2
No protein-ligand interaction detected (PLIP)NA.4: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)NA.9: 1 residues within 4Å:- Ligands: NA.13
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain D- Water bridges: C:L.52, C:L.52, D:L.52
NA.10: 0 residues within 4Å:- (No contacts)
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain C- Water bridges: D:T.51, C:T.51
NA.13: 3 residues within 4Å:- Chain C: S.54
- Chain D: S.54
- Ligands: NA.9
3 PLIP interactions:2 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:S.54
- Water bridges: D:E.53, C:S.54
- 4 x 2CV: HEGA-10(Non-covalent)
2CV.5: 10 residues within 4Å:- Chain A: R.61, M.64, P.68, W.71
- Chain B: F.17, E.34, S.40, K.41, Y.44, F.47
10 PLIP interactions:5 interactions with chain A, 5 interactions with chain B- Hydrophobic interactions: A:W.71, A:W.71, A:W.71, B:F.17, B:F.47
- Hydrogen bonds: A:R.61, A:M.64, B:E.34, B:S.40
- Water bridges: B:E.34
2CV.6: 5 residues within 4Å:- Chain B: M.64, P.68, N.69, W.71, I.75
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:W.71, B:W.71, B:W.71, B:I.75
- Hydrogen bonds: B:P.68, B:N.69
- Water bridges: B:N.65
2CV.11: 12 residues within 4Å:- Chain C: R.61, M.64, P.68, N.69, W.71, I.75
- Chain D: F.17, E.34, S.40, K.41, Y.44, F.47
15 PLIP interactions:9 interactions with chain D, 6 interactions with chain C- Hydrophobic interactions: D:F.17, D:F.47, C:W.71, C:W.71, C:W.71, C:I.75
- Hydrogen bonds: D:E.34, C:R.61, C:N.69
- Water bridges: D:E.34, D:E.34, D:D.38, D:S.40, D:K.41, D:K.41
2CV.12: 6 residues within 4Å:- Chain D: R.61, M.64, P.68, N.69, W.71, I.75
7 PLIP interactions:7 interactions with chain D- Hydrophobic interactions: D:W.71, D:W.71, D:W.71, D:W.71, D:I.75
- Hydrogen bonds: D:R.61, D:N.69
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Naylor, C.E. et al., Molecular basis of ion permeability in a voltage-gated sodium channel. Embo J. (2016)
- Release Date
- 2016-02-24
- Peptides
- Ion transport protein: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 3 x 12P: DODECAETHYLENE GLYCOL(Non-covalent)
- 6 x NA: SODIUM ION(Non-functional Binders)
- 4 x 2CV: HEGA-10(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Naylor, C.E. et al., Molecular basis of ion permeability in a voltage-gated sodium channel. Embo J. (2016)
- Release Date
- 2016-02-24
- Peptides
- Ion transport protein: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D