SMTL ID : 5c4s.1

Identification of a Novel Allosteric Binding Site for RORgt Inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.23 Å

Oligo State

monomer

Ligands

1 x 4Y5: 4-{1-[2-chloro-6-(trifluoromethyl)benzoyl]-4-fluoro-1H-indazol-3-yl}-3-fluorobenzoic acid(Non-covalent)

4Y5.1: 21 residues within 4Å: Chain A: W.51, A.55, L.58, T.59, I.62, Q.63, L.87, K.88, A.91, M.92, V.214, L.217, Q.218, Q.221, A.230, A.231, F.232, L.235, Y.236, L.239, F.240 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:W.51, A:T.59, A:I.62, A:A.91, A:M.92, A:V.214, A:L.235, A:Y.236, A:L.239, A:L.239, A:F.240, A:F.240 Hydrogen bonds: A:Q.63, A:A.231, A:F.232, A:F.232 Halogen bonds: A:V.214

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: L.58, L.125, I.131, L.217 No protein-ligand interaction detected (PLIP) GOL.3: 6 residues within 4Å: Chain A: G.126, C.127, S.128, E.129, L.130, R.216 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.126, A:S.128, A:S.128, A:E.129, A:E.129, A:L.130, A:R.216, A:R.216

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scheepstra, M. et al., Identification of an allosteric binding site for ROR gamma t inhibition. Nat Commun (2015)

Release Date

2015-12-16

Peptides

Nuclear receptor ROR-gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nuclear receptor ROR-gamma

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