SMTL ID : 5c4u.1

Identification of a Novel Allosteric Binding Site for RORgt Inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

monomer

Ligands

1 x 4Y7: 4-{1-[2-chloro-6-(trifluoromethyl)benzoyl]-1H-pyrazolo[4,3-b]pyridin-3-yl}-5-fluoro-2-hydroxybenzoic acid(Non-covalent)

4Y7.1: 21 residues within 4Å: Chain A: W.51, A.55, L.58, T.59, I.62, Q.63, L.87, K.88, M.92, V.214, L.217, Q.218, Q.221, V.228, A.230, A.231, F.232, L.235, Y.236, L.239, F.240 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:W.51, A:T.59, A:I.62, A:V.214, A:L.235, A:Y.236, A:L.239, A:L.239, A:F.240 Hydrogen bonds: A:Q.63, A:A.231, A:F.232, A:F.232, A:F.232 Halogen bonds: A:V.214

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: G.126, C.127, S.128, E.129, L.130, R.216 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.128, A:S.128, A:E.129, A:E.129, A:L.130, A:R.216, A:R.216 GOL.3: 5 residues within 4Å: Chain A: Q.168, E.169, K.170, R.171, K.172 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.170, A:R.171, A:R.171, A:R.171, A:K.172 GOL.4: 4 residues within 4Å: Chain A: L.58, F.122, L.125, I.131 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scheepstra, M. et al., Identification of an allosteric binding site for ROR gamma t inhibition. Nat Commun (2015)

Release Date

2015-12-16

Peptides

Nuclear receptor ROR-gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nuclear receptor ROR-gamma

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