SMTL ID : 5c4t.1

Identification of a Novel Allosteric Binding Site for RORgt Inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

monomer

Ligands

1 x 4Y6: (1S)-4-{1-[2-chloro-6-(trifluoromethyl)benzoyl]-4-fluoro-1H-indazol-3-yl}-1-methylcyclohex-3-ene-1-carboxylic acid(Non-covalent)

4Y6.1: 22 residues within 4Å: Chain A: W.51, A.55, L.58, T.59, I.62, Q.63, L.87, K.88, M.92, V.214, L.217, Q.218, Q.221, Q.229, A.230, A.231, F.232, L.235, Y.236, L.239, F.240 Ligands: GOL.6 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:W.51, A:T.59, A:I.62, A:Q.63, A:L.217, A:F.232, A:L.235, A:Y.236, A:L.239, A:L.239, A:L.239, A:F.240, A:F.240 Hydrogen bonds: A:Q.63, A:A.231, A:F.232, A:F.232, A:Y.236 Halogen bonds: A:V.214

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: Q.80, Q.83, I.84, L.87, F.232, P.234 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.83 SO4.3: 4 residues within 4Å: Chain A: Q.168, E.169, K.170, R.171 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.170, A:R.171

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 5 residues within 4Å: Chain A: E.5, V.8, H.186, H.187, K.190 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.5, A:H.187, A:K.190 GOL.5: 5 residues within 4Å: Chain A: E.38, G.41, Y.42, K.45, R.53 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.38, A:K.45, A:K.45, A:R.53, A:R.53 GOL.6: 5 residues within 4Å: Chain A: K.88, C.210, V.214, L.239 Ligands: 4Y6.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.88 GOL.7: 4 residues within 4Å: Chain A: L.125, I.131, I.134, H.213 No protein-ligand interaction detected (PLIP) GOL.8: 3 residues within 4Å: Chain A: Q.175, Y.178, N.179 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.175, A:Q.175, A:N.179 GOL.9: 5 residues within 4Å: Chain A: H.57, F.111, F.112, E.113, G.114 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.111, A:E.113, A:G.114 GOL.10: 4 residues within 4Å: Chain A: E.52, H.56, I.226, V.227 1 PLIP interactions: 1 interactions with chain A Water bridges: A:V.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scheepstra, M. et al., Identification of an allosteric binding site for ROR gamma t inhibition. Nat Commun (2015)

Release Date

2015-12-16

Peptides

Nuclear receptor ROR-gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nuclear receptor ROR-gamma

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