SMTL ID : 6t4t.1

ROR(gamma)t ligand binding domain in complex with 20-alpha-hydroxycholesterol and allosteric ligand FM26

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: H.57, F.111, F.112, E.113 Ligands: HCD.4 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:H.57, A:F.111, A:E.113 Water bridges: A:Q.20, A:H.57, A:E.60, A:E.60 GOL.2: 6 residues within 4Å: Chain A: V.66, K.70, Q.83, I.84, L.87, F.232 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.70, A:Q.83

1 x L3E: 4-[(~{E})-[3-[2-chloranyl-6-(trifluoromethyl)phenyl]-5-(1~{H}-pyrrol-3-yl)-1,2-oxazol-4-yl]methylideneamino]benzoic acid(Non-covalent)

L3E.3: 22 residues within 4Å: Chain A: W.51, A.55, L.58, T.59, I.62, Q.63, L.87, K.88, A.91, M.92, V.214, L.217, Q.218, Q.221, I.226, Q.229, A.230, A.231, F.232, Y.236, L.239, F.240 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:W.51, A:T.59, A:Q.63, A:L.217, A:L.217, A:I.226, A:Y.236, A:L.239, A:F.240, A:F.240, A:F.240 Hydrogen bonds: A:Q.63, A:K.88, A:M.92, A:A.231, A:F.232 Halogen bonds: A:V.214

1 x HCD: (3alpha,8alpha)-cholest-5-ene-3,20-diol(Non-covalent)

HCD.4: 18 residues within 4Å: Chain A: Q.20, L.21, C.54, H.57, V.95, R.98, M.99, F.112, F.122, L.125, L.130, I.131, I.134, F.135, H.213, L.217, F.220 Ligands: GOL.1 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.21, A:H.57, A:M.99, A:F.112, A:L.125, A:L.130, A:I.131, A:I.134, A:L.217, A:F.220 Water bridges: A:Q.20, A:R.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

de Vries, R.M.J.M. et al., Cooperativity between the orthosteric and allosteric ligand binding sites of ROR gamma t. Proc.Natl.Acad.Sci.USA (2021)

Release Date

2020-11-18

Peptides

Nuclear receptor ROR-gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nuclear receptor ROR-gamma

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