SMTL ID : 5cil.1

Crystal Structure of non-neutralizing version of 4E10 (WDWD) with epitope bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 12 residues within 4Å: Chain A: F.179, P.180, V.182, S.190, L.191, S.192 Chain B: Q.161, E.162, S.163, S.177, S.178, T.179 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:S.163, B:S.178, B:T.179, A:F.179, A:S.190, A:S.192 GOL.3: 5 residues within 4Å: Chain B: Q.11, L.13, R.18, A.19, T.20 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.11, B:Q.11, B:T.20

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: R.66, S.84, R.86 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain B: R.46, V.59, A.60, F.63 Ligand excluded by PLIP

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 5 residues within 4Å: Chain B: G.9, T.10, Q.101, G.102, K.104 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rujas, E. et al., Structural and Thermodynamic Basis of Epitope Binding by Neutralizing and Nonneutralizing Forms of the Anti-HIV-1 Antibody 4E10. J.Virol. (2015)

Release Date

2015-09-23

Peptides

FAB 4E10 HEAVY CHAIN: A
FAB 4E10 LIGHT CHAIN: B
Peptide from the MPER region of the ENV protein of HIV-1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
P

FAB 4E10 HEAVY CHAIN

FAB 4E10 LIGHT CHAIN

Peptide from the MPER region of the ENV protein of HIV-1

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