SMTL ID : 6o42.2 (1 other biounit)

Crystal structure of the germline PGZL1 (PGZL1_gVmDmJ) Fab in complex with MPER peptide epitope.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: G.58, I.59, P.60, D.61 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.58, A:I.59, A:D.61, A:D.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, L. et al., An MPER antibody neutralizes HIV-1 using germline features shared among donors. Nat Commun (2019)

Release Date

2019-12-04

Peptides

PGZL1_gVmDmJ light chain: A
PGZL1_gVmDmJ heavy chain: B
MPER peptide, region 671-683 of HIV-1 gp41: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
I

PGZL1_gVmDmJ light chain

PGZL1_gVmDmJ heavy chain

MPER peptide, region 671-683 of HIV-1 gp41

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