SMTL ID : 6o3j.1 (1 other biounit)

Crystal structure of the Fab fragment of the human HIV-1 neutralizing antibody PGZL1 in complex with its MPER peptide epitope (region 671-683 of HIV-1 gp41) and phosphatidic acid (06:0 PA)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.42 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x 44E: (2R)-3-(phosphonooxy)propane-1,2-diyl dihexanoate(Non-covalent)

44E.1: 4 residues within 4Å: Chain B: F.29, S.30, T.31 Chain C: K.13 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain C Hydrogen bonds: B:F.29, B:S.30, C:K.13, C:K.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, L. et al., An MPER antibody neutralizes HIV-1 using germline features shared among donors. Nat Commun (2019)

Release Date

2019-12-04

Peptides

PGZL1 light chain: A
PGZL1 heavy chain: B
MPER peptide, region 671-683 of HIV-1 gp41: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
G

PGZL1 light chain

PGZL1 heavy chain

MPER peptide, region 671-683 of HIV-1 gp41

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