SMTL ID : 5d25.1

First bromodomain of BRD4 bound to inhibitor XD27

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x 56M: 4-acetyl-N-[5-(diethylsulfamoyl)-2-hydroxyphenyl]-3,5-dimethyl-1H-pyrrole-2-carboxamide(Non-covalent)

56M.1: 12 residues within 4Å: Chain A: W.39, P.40, F.41, Q.43, V.45, K.49, L.50, L.52, Y.97, N.98, I.104 Ligands: GOL.2 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.41, A:L.50, A:L.50, A:L.52, A:Y.97, A:I.104 Hydrogen bonds: A:P.40, A:K.49, A:N.98 Water bridges: A:Q.43, A:D.46 pi-Stacking: A:W.39

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: W.39, D.103, M.107 Ligands: 56M.1 No protein-ligand interaction detected (PLIP)

1 x BU3: (R,R)-2,3-BUTANEDIOL(Non-covalent)

BU3.3: 5 residues within 4Å: Chain A: Q.17, Q.22, L.25, L.72, N.75 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.17, A:Q.22 Water bridges: A:Q.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hugle, M. et al., 4-Acyl Pyrrole Derivatives Yield Novel Vectors for Designing Inhibitors of the Acetyl-Lysine Recognition Site of BRD4(1). J.Med.Chem. (2016)

Release Date

2016-01-20

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

Related Entries With Identical Sequence