SMTL ID : 5dny.1

Structure of the ATPrS-Mre11/Rad50-DNA complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.11 Å

Oligo State

hetero-2-2-mer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain A: D.28, H.30, D.69, H.206, H.208 Ligands: MG.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.28, A:H.30, A:D.69, A:H.208 MG.2: 6 residues within 4Å: Chain A: D.28, D.69, N.104, H.178, H.206 Ligands: MG.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.69, A:H.206 MG.4: 5 residues within 4Å: Chain C: D.69, N.104, H.178, H.206 Ligands: MG.5 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.69, C:H.178 MG.5: 5 residues within 4Å: Chain C: D.28, H.30, D.69, H.208 Ligands: MG.4 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.28, C:H.30, C:D.69, C:H.208

2 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)

AGS.3: 23 residues within 4Å: Chain B: K.14, S.15, G.35, S.36, G.37, K.38, S.39, S.40, T.60, I.62, T.63, K.64, Q.134, D.312, E.313, K.360 Chain D: Y.256, L.276, N.280, L.281, S.282, G.283, E.285 19 PLIP interactions: 15 interactions with chain B, 4 interactions with chain D Hydrogen bonds: B:S.15, B:G.35, B:G.35, B:S.36, B:G.37, B:K.38, B:S.39, B:S.39, B:S.40, B:T.60, B:K.64, B:Q.134, B:K.360, D:Y.256, D:S.282, D:G.283, D:E.285 Salt bridges: B:K.14, B:K.38 AGS.6: 25 residues within 4Å: Chain B: Y.256, L.276, N.280, S.282, G.283, G.284, E.285 Chain D: K.14, S.15, E.33, G.35, S.36, G.37, K.38, S.39, S.40, T.60, I.62, T.63, K.64, Q.134, D.312, E.313, H.344, K.360 19 PLIP interactions: 2 interactions with chain B, 17 interactions with chain D Hydrogen bonds: B:S.282, B:E.285, D:G.35, D:G.35, D:S.36, D:G.37, D:K.38, D:S.39, D:S.39, D:S.39, D:S.40, D:S.40, D:T.60, D:K.64, D:Q.134, D:D.312, D:K.360 Salt bridges: D:K.14, D:K.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y. et al., ATP-dependent DNA binding, unwinding, and resection by the Mre11/Rad50 complex. Embo J. (2016)

Release Date

2016-02-24

Peptides

DNA double-strand break repair protein Mre11: AC
DNA double-strand break repair Rad50 ATPase,DNA double-strand break repair Rad50 ATPase: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

DNA double-strand break repair protein Mre11

DNA double-strand break repair Rad50 ATPase,DNA double-strand break repair Rad50 ATPase

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