SMTL ID : 5e8f.2 (1 other biounit)

Structure of Fully modified geranylgeranylated PDE6C Peptide in complex with PDE6D

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x LYS- SER- LYS- THR- CMT: Cone cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha'(Non-covalent)

LYS-SER-LYS-THR-CMT.1: 18 residues within 4Å: Chain A: I.52, L.53, C.55, V.58, V.79, L.86, E.87, W.89, I.108, E.109, A.110, A.111, Q.115, M.116, M.117, L.122, Y.148 Ligands: GER.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.79 Hydrogen bonds: A:L.86, A:E.87, A:E.87, A:E.109, A:E.109, A:A.111, A:M.117 Water bridges: A:E.87, A:W.89

1 x GER: GERAN-8-YL GERAN(Non-covalent)

GER.2: 19 residues within 4Å: Chain A: M.19, L.21, L.37, S.38, A.46, I.52, R.60, L.62, L.75, Q.77, I.128, T.130, F.132, S.142, V.144, L.146, Y.148 Ligands: LYS-SER-LYS-THR-CMT.1, LYS-SER-LYS-THR-CMT.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.37, A:A.46, A:I.52, A:L.62, A:L.75, A:T.130, A:F.132, A:V.144, A:L.146, A:L.146, A:Y.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fansa, E.K. et al., The N- and C-terminal ends of RPGR can bind to PDE6 delta. Embo Rep. (2015)

Release Date

2015-11-18

Peptides

Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta

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