SMTL ID : 7qf9.2 (1 other biounit)

Crystal structure of PDE6D bound to HRas peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

hetero-1-1-mer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: R.60, L.62, L.75, F.91, W.104, S.106 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.60, A:R.60, A:S.106, A:S.106 EDO.2: 3 residues within 4Å: Chain A: T.103, W.104, Q.105 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.105

1 x FAR: FARNESYL(Non-covalent)

FAR.3: 13 residues within 4Å: Chain A: M.19, I.52, V.58, R.60, L.62, Q.77, W.89, I.128, T.130, L.146, Y.148 Chain B: K.9, C.10 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.52, A:V.58, A:L.62, A:W.89, A:W.89, A:I.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yelland, T. et al., Stabilization of the RAS:PDE6D Complex Is a Novel Strategy to Inhibit RAS Signaling. J.Med.Chem. (2022)

Release Date

2022-02-09

Peptides

Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta: A
HRas peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

B
EEE

Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta

HRas peptide

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