SMTL ID : 5fp0.1

ligand complex structure of soluble epoxide hydrolase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 4 residues within 4Å: Chain A: V.417, M.420, V.499 Ligands: SZC.2 1 PLIP interactions: 1 interactions with chain A Water bridges: A:L.418 DMS.3: 4 residues within 4Å: Chain B: V.417, M.420, V.499 Ligands: SZC.4 1 PLIP interactions: 1 interactions with chain B Water bridges: B:L.418

2 x SZC: N-CYCLOPENTYL-2-[4-(TRIFLUOROMETHYL)PHENYL]-3H-BENZIMIDAZOLE-4-SULFONAMIDE(Non-covalent)

SZC.2: 18 residues within 4Å: Chain A: F.268, P.269, D.336, W.337, M.340, F.382, Y.384, Q.385, L.409, M.420, Y.467, M.470, V.499, L.500, M.504, H.525, W.526 Ligands: DMS.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.268, A:F.382, A:Y.384 Hydrogen bonds: A:Y.384, A:Y.384, A:Y.384, A:Q.385, A:Y.467 pi-Stacking: A:W.337, A:W.337, A:W.337 SZC.4: 18 residues within 4Å: Chain B: F.268, P.269, D.336, W.337, M.340, F.382, Y.384, Q.385, L.409, M.420, Y.467, M.470, V.499, L.500, M.504, H.525, W.526 Ligands: DMS.3 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:F.268, B:F.382, B:Y.384 Hydrogen bonds: B:Y.384, B:Y.384, B:Q.385 pi-Stacking: B:W.337, B:W.337, B:W.337

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xue, Y. et al., Fragment Screening of Soluble Epoxide Hydrolase for Lead Generation-Structure-Based Hit Evaluation and Chemistry Exploration. Chemmedchem (2016)

Release Date

2016-03-02

Peptides

BIFUNCTIONAL EPOXIDE HYDROLASE 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

BIFUNCTIONAL EPOXIDE HYDROLASE 2

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