SMTL ID : 5alv.1

ligand complex structure of soluble epoxide hydrolase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: F.268, Y.384, F.388, L.409, Y.467 Ligands: 6TZ.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.268, A:Y.467 SO4.2: 7 residues within 4Å: Chain A: L.229, Y.277, R.441, M.442, V.443, T.444, E.447 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:M.442 Water bridges: A:Y.277, A:Y.277 SO4.5: 6 residues within 4Å: Chain B: F.268, Y.384, F.388, L.409, Y.467 Ligands: 6TZ.7 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:F.268, B:Y.467 SO4.6: 7 residues within 4Å: Chain B: L.229, Y.277, R.441, M.442, V.443, T.444, E.447 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.277, B:M.442

4 x 6TZ: 3-(3-fluorophenyl)-1H-pyrazole(Non-covalent)

6TZ.3: 9 residues within 4Å: Chain A: D.336, W.337, M.340, T.361, Y.384, Q.385, Y.467 Ligands: SO4.1, 6TZ.4 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:M.340, A:T.361, A:Y.384, A:Y.467 pi-Stacking: A:W.337, A:W.337 6TZ.4: 7 residues within 4Å: Chain A: M.340, P.362, I.376, Q.385, L.500, M.504 Ligands: 6TZ.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.385, A:Q.385 6TZ.7: 9 residues within 4Å: Chain B: D.336, W.337, M.340, T.361, Y.384, Q.385, Y.467 Ligands: SO4.5, 6TZ.8 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:M.340, B:T.361, B:Y.384, B:Y.467 Hydrogen bonds: B:Y.384, B:Y.467 pi-Stacking: B:W.337, B:W.337 6TZ.8: 7 residues within 4Å: Chain B: M.340, P.362, I.376, Q.385, L.500, M.504 Ligands: 6TZ.7 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.385, B:Q.385

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oster, L. et al., Successful Generation of Structural Information for Fragment-Based Drug Discovery. Drug Discov Today (2015)

Release Date

2015-05-13

Peptides

BIFUNCTIONAL EPOXIDE HYDROLASE 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

BIFUNCTIONAL EPOXIDE HYDROLASE 2

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