SMTL ID : 5alg.1

ligand complex structure of soluble epoxide hydrolase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 4 residues within 4Å: Chain A: P.502, Q.503, S.505, R.517 No protein-ligand interaction detected (PLIP) DMS.5: 4 residues within 4Å: Chain B: P.502, Q.503, S.505, R.517 No protein-ligand interaction detected (PLIP)

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: L.229, Y.277, R.441, M.442, V.443, T.444, E.447 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:M.442 Water bridges: A:Y.277, A:Y.277 SO4.3: 5 residues within 4Å: Chain A: K.145, M.146, F.148, D.149, L.151 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.148 Water bridges: A:L.151 SO4.6: 7 residues within 4Å: Chain B: L.229, Y.277, R.441, M.442, V.443, T.444, E.447 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.277, B:M.442 SO4.7: 5 residues within 4Å: Chain B: K.145, M.146, F.148, D.149, L.151 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:F.148 Water bridges: B:L.151, A:D.323

2 x R4N: 4-[(3-chlorophenyl)methyl]-N-[[(3S)-2,3-dihydro-1,4-benzodioxin-3-yl]methyl]-3-oxidanylidene-1,4-benzothiazine-6-carboxamide(Non-covalent)

R4N.4: 20 residues within 4Å: Chain A: F.268, P.269, D.336, W.337, M.340, T.361, F.382, Y.384, Q.385, F.388, L.398, L.409, M.420, L.429, Y.467, D.497, V.499, L.500, M.504, H.525 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.268, A:F.268, A:P.269, A:F.382, A:F.382, A:L.409, A:V.499, A:V.499, A:L.500, A:L.500 pi-Cation interactions: A:H.525 R4N.8: 20 residues within 4Å: Chain B: F.268, P.269, D.336, W.337, M.340, T.361, F.382, Y.384, Q.385, F.388, L.398, L.409, M.420, L.429, Y.467, D.497, V.499, L.500, M.504, H.525 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:F.268, B:F.268, B:P.269, B:F.382, B:F.382, B:L.409, B:V.499, B:V.499, B:L.500, B:L.500 Hydrogen bonds: B:Y.384, B:Y.467 pi-Cation interactions: B:H.525

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oster, L. et al., Successful Generation of Structural Information for Fragment-Based Drug Discovery. Drug Discov Today (2015)

Release Date

2015-05-13

Peptides

BIFUNCTIONAL EPOXIDE HYDROLASE 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

BIFUNCTIONAL EPOXIDE HYDROLASE 2

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