SMTL ID : 5alh.1

ligand complex structure of soluble epoxide hydrolase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

4 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 4 residues within 4Å: Chain A: K.145, F.148, F.150, L.151 No protein-ligand interaction detected (PLIP) DMS.2: 6 residues within 4Å: Chain A: L.229, Y.277, R.441, M.442, V.443, T.444 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.277 Salt bridges: A:E.447 DMS.5: 4 residues within 4Å: Chain B: K.145, F.148, F.150, L.151 No protein-ligand interaction detected (PLIP) DMS.6: 6 residues within 4Å: Chain B: L.229, Y.277, R.441, M.442, V.443, T.444 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:E.447

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: R.250, E.299, S.300, S.301, K.457 7 PLIP interactions: 7 interactions with chain A Water bridges: A:S.301, A:S.301, A:A.302, A:K.457, A:K.457 Salt bridges: A:R.250, A:K.457 SO4.7: 5 residues within 4Å: Chain B: R.250, E.299, S.300, S.301, K.457 7 PLIP interactions: 7 interactions with chain B Water bridges: B:S.301, B:S.301, B:A.302, B:K.457, B:K.457 Salt bridges: B:R.250, B:K.457

2 x 4UA: 4-[[(2-methoxy-5-methyl-phenyl)sulfonylamino]methyl]-4-phenyl-N-(p-tolylmethyl)piperidine-1-carboxamide(Non-covalent)

4UA.4: 18 residues within 4Å: Chain A: F.268, D.336, W.337, M.340, T.361, P.362, I.364, I.376, F.382, Y.384, Q.385, M.420, Y.467, V.499, L.500, M.504, H.525, W.526 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:T.361, A:I.364, A:I.376, A:F.382, A:F.382, A:V.499, A:L.500, A:H.525, A:W.526, A:W.526 Hydrogen bonds: A:D.336 pi-Stacking: A:H.525 4UA.8: 18 residues within 4Å: Chain B: F.268, D.336, W.337, M.340, T.361, P.362, I.364, I.376, F.382, Y.384, Q.385, M.420, Y.467, V.499, L.500, M.504, H.525, W.526 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:T.361, B:I.364, B:I.376, B:F.382, B:F.382, B:V.499, B:L.500, B:H.525, B:W.526, B:W.526 Hydrogen bonds: B:D.336, B:Y.384, B:Y.467 pi-Stacking: B:H.525

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oster, L. et al., Successful Generation of Structural Information for Fragment-Based Drug Discovery. Drug Discov Today (2015)

Release Date

2015-05-13

Peptides

BIFUNCTIONAL EPOXIDE HYDROLASE 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

BIFUNCTIONAL EPOXIDE HYDROLASE 2

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