SMTL ID : 5fye.1 (1 other biounit)

Pseudomonas aeruginosa RmlA in complex with allosteric inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: H.126 Chain C: G.228, R.229, G.230 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain B: H.126, D.127 Chain D: G.228, R.229, G.230 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain A: G.228, R.229, G.230 Chain C: H.126 Ligand excluded by PLIP CL.10: 5 residues within 4Å: Chain B: G.228, R.229, G.230 Chain D: H.126, D.127 Ligand excluded by PLIP

4 x LD6: N-(6-Amino-1-(3-fluorobenzyl)-2,4-dioxo-1,2,3,4-tetrahydropyrimidin-5-yl)-N-methylbenzenesulfonamide(Non-covalent)

LD6.2: 16 residues within 4Å: Chain A: Y.48, S.51, T.52, L.55, Y.123, Y.124, G.125, F.128, H.129, K.259, V.260, A.261, E.265, I.266, R.269 Chain C: R.229 14 PLIP interactions: 13 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:L.55, A:L.55, A:V.260, A:A.261, A:I.266, A:R.269 Hydrogen bonds: A:K.259, A:A.261 Water bridges: A:G.125, A:D.127, A:F.128, A:C.262 pi-Stacking: A:F.128 pi-Cation interactions: C:R.229 LD6.5: 16 residues within 4Å: Chain B: Y.48, S.51, T.52, L.55, Y.123, Y.124, G.125, F.128, H.129, K.259, V.260, A.261, E.265, I.266, R.269 Chain D: R.229 12 PLIP interactions: 9 interactions with chain B, 3 interactions with chain D Hydrophobic interactions: B:L.55, B:L.55, B:F.128, B:V.260, B:A.261, B:I.266 Hydrogen bonds: B:A.261 Water bridges: B:D.127, B:F.128, D:R.229, D:R.229 pi-Cation interactions: D:R.229 LD6.8: 16 residues within 4Å: Chain A: R.229 Chain C: Y.48, S.51, T.52, L.55, Y.123, Y.124, G.125, F.128, H.129, K.259, V.260, A.261, E.265, I.266, R.269 15 PLIP interactions: 14 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: C:L.55, C:L.55, C:V.260, C:A.261, C:I.266, C:R.269 Hydrogen bonds: C:K.259, C:A.261 Water bridges: C:G.125, C:D.127, C:F.128, C:C.262, C:E.265 pi-Stacking: C:F.128 pi-Cation interactions: A:R.229 LD6.11: 16 residues within 4Å: Chain B: R.229 Chain D: Y.48, S.51, T.52, L.55, Y.123, Y.124, G.125, F.128, H.129, K.259, V.260, A.261, E.265, I.266, R.269 12 PLIP interactions: 9 interactions with chain D, 3 interactions with chain B Hydrophobic interactions: D:L.55, D:L.55, D:F.128, D:V.260, D:A.261, D:I.266 Hydrogen bonds: D:A.261 Water bridges: D:D.127, D:F.128, B:R.229, B:R.229 pi-Cation interactions: B:R.229

4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.3: 9 residues within 4Å: Chain A: F.160, G.164, K.165, A.166, L.222, S.223, V.224, I.226 Chain C: Y.303 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.166, A:V.224, A:V.224 MES.6: 9 residues within 4Å: Chain B: F.160, G.164, K.165, A.166, L.222, S.223, V.224, I.226 Chain D: Y.303 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.166, B:V.224 MES.9: 9 residues within 4Å: Chain A: Y.303 Chain C: F.160, G.164, K.165, A.166, L.222, S.223, V.224, I.226 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:A.166, C:V.224, C:V.224 MES.12: 9 residues within 4Å: Chain B: Y.303 Chain D: F.160, G.164, K.165, A.166, L.222, S.223, V.224, I.226 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:A.166, D:V.224

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tran, F. et al., Allosteric Competitive Inhibitors of the Glucose-1-Phosphate Thymidylyltransferase (Rmla) from Pseudomonas Aeruginosa. To be Published

Release Date

2017-03-22

Peptides

GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
C

D
D

GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE

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