- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x LD6: N-(6-Amino-1-(3-fluorobenzyl)-2,4-dioxo-1,2,3,4-tetrahydropyrimidin-5-yl)-N-methylbenzenesulfonamide(Non-covalent)
LD6.2: 16 residues within 4Å:- Chain A: Y.48, S.51, T.52, L.55, Y.123, Y.124, G.125, F.128, H.129, K.259, V.260, A.261, E.265, I.266, R.269
- Chain C: R.229
14 PLIP interactions:13 interactions with chain A, 1 interactions with chain C- Hydrophobic interactions: A:L.55, A:L.55, A:V.260, A:A.261, A:I.266, A:R.269
- Hydrogen bonds: A:K.259, A:A.261
- Water bridges: A:G.125, A:D.127, A:F.128, A:C.262
- pi-Stacking: A:F.128
- pi-Cation interactions: C:R.229
LD6.5: 16 residues within 4Å:- Chain B: Y.48, S.51, T.52, L.55, Y.123, Y.124, G.125, F.128, H.129, K.259, V.260, A.261, E.265, I.266, R.269
- Chain D: R.229
12 PLIP interactions:9 interactions with chain B, 3 interactions with chain D- Hydrophobic interactions: B:L.55, B:L.55, B:F.128, B:V.260, B:A.261, B:I.266
- Hydrogen bonds: B:A.261
- Water bridges: B:D.127, B:F.128, D:R.229, D:R.229
- pi-Cation interactions: D:R.229
LD6.8: 16 residues within 4Å:- Chain A: R.229
- Chain C: Y.48, S.51, T.52, L.55, Y.123, Y.124, G.125, F.128, H.129, K.259, V.260, A.261, E.265, I.266, R.269
15 PLIP interactions:14 interactions with chain C, 1 interactions with chain A- Hydrophobic interactions: C:L.55, C:L.55, C:V.260, C:A.261, C:I.266, C:R.269
- Hydrogen bonds: C:K.259, C:A.261
- Water bridges: C:G.125, C:D.127, C:F.128, C:C.262, C:E.265
- pi-Stacking: C:F.128
- pi-Cation interactions: A:R.229
LD6.11: 16 residues within 4Å:- Chain B: R.229
- Chain D: Y.48, S.51, T.52, L.55, Y.123, Y.124, G.125, F.128, H.129, K.259, V.260, A.261, E.265, I.266, R.269
12 PLIP interactions:9 interactions with chain D, 3 interactions with chain B- Hydrophobic interactions: D:L.55, D:L.55, D:F.128, D:V.260, D:A.261, D:I.266
- Hydrogen bonds: D:A.261
- Water bridges: D:D.127, D:F.128, B:R.229, B:R.229
- pi-Cation interactions: B:R.229
- 4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
MES.3: 9 residues within 4Å:- Chain A: F.160, G.164, K.165, A.166, L.222, S.223, V.224, I.226
- Chain C: Y.303
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:A.166, A:V.224, A:V.224
MES.6: 9 residues within 4Å:- Chain B: F.160, G.164, K.165, A.166, L.222, S.223, V.224, I.226
- Chain D: Y.303
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:A.166, B:V.224
MES.9: 9 residues within 4Å:- Chain A: Y.303
- Chain C: F.160, G.164, K.165, A.166, L.222, S.223, V.224, I.226
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:A.166, C:V.224, C:V.224
MES.12: 9 residues within 4Å:- Chain B: Y.303
- Chain D: F.160, G.164, K.165, A.166, L.222, S.223, V.224, I.226
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:A.166, D:V.224
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tran, F. et al., Allosteric Competitive Inhibitors of the Glucose-1-Phosphate Thymidylyltransferase (Rmla) from Pseudomonas Aeruginosa. To be Published
- Release Date
- 2017-03-22
- Peptides
- GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
DC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x LD6: N-(6-Amino-1-(3-fluorobenzyl)-2,4-dioxo-1,2,3,4-tetrahydropyrimidin-5-yl)-N-methylbenzenesulfonamide(Non-covalent)
- 4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tran, F. et al., Allosteric Competitive Inhibitors of the Glucose-1-Phosphate Thymidylyltransferase (Rmla) from Pseudomonas Aeruginosa. To be Published
- Release Date
- 2017-03-22
- Peptides
- GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
DC
CD
D