- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.45 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NVQ: ~{N}-[1-[(4-bromophenyl)methyl]-6-[3-(methylamino)propylamino]-2,4-bis(oxidanylidene)pyrimidin-5-yl]-~{N}-methyl-benzenesulfonamide(Non-covalent)
- 4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
MES.2: 9 residues within 4Å:- Chain A: F.160, G.164, K.165, A.166, L.222, S.223, V.224, I.226
- Chain C: Y.303
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:A.166, A:V.224
MES.7: 9 residues within 4Å:- Chain B: F.160, G.164, K.165, A.166, L.222, S.223, V.224, I.226
- Chain D: Y.303
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:A.166, B:V.224, B:V.224
MES.12: 8 residues within 4Å:- Chain A: Y.303
- Chain C: F.160, G.164, K.165, A.166, S.223, V.224, I.226
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:A.166, C:V.224, C:V.224
- Water bridges: C:I.226
MES.15: 8 residues within 4Å:- Chain B: Y.303
- Chain D: F.160, G.164, K.165, A.166, L.222, V.224, I.226
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:A.166, D:V.224
- 8 x CL: CHLORIDE ION(Non-functional Binders)
CL.3: 5 residues within 4Å:- Chain A: H.126
- Chain C: G.228, R.229, G.230
- Ligands: NVQ.1
Ligand excluded by PLIPCL.4: 5 residues within 4Å:- Chain A: G.228, R.229, G.230
- Chain C: H.126
- Ligands: NVQ.11
Ligand excluded by PLIPCL.5: 3 residues within 4Å:- Chain A: V.182, T.210, N.213
Ligand excluded by PLIPCL.8: 4 residues within 4Å:- Chain B: G.228, R.229, G.230
- Chain D: H.126
Ligand excluded by PLIPCL.9: 5 residues within 4Å:- Chain B: H.126
- Chain D: G.228, R.229, G.230
- Ligands: NVQ.6
Ligand excluded by PLIPCL.10: 3 residues within 4Å:- Chain B: V.182, T.210, N.213
Ligand excluded by PLIPCL.13: 3 residues within 4Å:- Chain C: V.182, T.210, N.213
Ligand excluded by PLIPCL.16: 3 residues within 4Å:- Chain D: V.182, T.210, N.213
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Xiao, G. et al., Next generation Glucose-1-phosphate thymidylyltransferase (RmlA) inhibitors: An extended SAR study to direct future design. Bioorg.Med.Chem. (2021)
- Release Date
- 2020-08-19
- Peptides
- Glucose-1-phosphate thymidylyltransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.45 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NVQ: ~{N}-[1-[(4-bromophenyl)methyl]-6-[3-(methylamino)propylamino]-2,4-bis(oxidanylidene)pyrimidin-5-yl]-~{N}-methyl-benzenesulfonamide(Non-covalent)
- 4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- 8 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Xiao, G. et al., Next generation Glucose-1-phosphate thymidylyltransferase (RmlA) inhibitors: An extended SAR study to direct future design. Bioorg.Med.Chem. (2021)
- Release Date
- 2020-08-19
- Peptides
- Glucose-1-phosphate thymidylyltransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D