SMTL ID : 5gk4.1

Native structure of fructose 1,6-bisphosphate aldolase from Escherichia coli at 2.0 Angstrom resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: Q.19, Y.207, P.215, F.217, S.259, L.260, N.261 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.259 Water bridges: A:Q.19, A:K.26, A:N.261, A:N.261 GOL.2: 3 residues within 4Å: Chain A: K.114, L.117, Y.161 No protein-ligand interaction detected (PLIP)

4 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: H.111, E.175, H.265 Ligands: ZN.4 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.175, A:E.175, H2O.2, H2O.5 ZN.4: 3 residues within 4Å: Chain A: H.111, H.265 Ligands: ZN.3 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:H.111, A:H.265, H2O.3, H2O.6, H2O.6, H2O.7 ZN.6: 4 residues within 4Å: Chain B: H.111, E.175, H.265 Ligands: ZN.7 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.175, B:E.175, H2O.9, H2O.11 ZN.7: 3 residues within 4Å: Chain B: H.111, H.265 Ligands: ZN.6 6 PLIP interactions: 2 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:H.111, B:H.265, H2O.9, H2O.14, H2O.14, H2O.14

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 8 residues within 4Å: Chain A: S.89, H.92, H.93, Q.96 Chain B: S.89, H.92, H.93, Q.96 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Water bridges: A:Q.96 Hydrogen bonds: B:Q.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tran, T.H. et al., Apo structure of fructose 1,6-bisphosphate aldolase from Escherichia coli at 2.0 Angstrom resolution. To Be Published

Release Date

2017-07-05

Peptides

Fructose-bisphosphate aldolase class 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Fructose-bisphosphate aldolase class 2

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