SMTL ID : 5gk5.2 (3 other biounits)

Apo structure of fructose 1,6-bisphosphate aldolase from Escherichia coli at 1.9 angstrom resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: Q.19, Y.207, P.215, F.217, S.259, L.260, N.261 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:P.215, A:N.261 Water bridges: A:Q.19, A:K.26, A:N.261 GOL.5: 7 residues within 4Å: Chain B: Q.19, Y.207, P.215, F.217, S.259, L.260, N.261 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:N.261 Water bridges: B:Q.19, B:Q.23, B:Y.207, B:Y.207, B:Y.207, B:F.217, B:N.261, B:N.261

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 10 residues within 4Å: Chain A: V.38, G.39, T.40, D.41, L.335 Chain B: V.38, G.39, T.40, D.41, L.335 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:T.40, B:D.41, A:T.40, A:T.40, A:D.41 Water bridges: B:T.40, B:D.41 PEG.6: 7 residues within 4Å: Chain A: S.89, H.92, H.93, Q.96 Chain B: S.89, H.92, H.93 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Q.96, B:H.92, B:H.93

4 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: H.111, E.175, H.227, H.265 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.175, A:E.175, A:H.227, A:H.265, H2O.1 ZN.4: 3 residues within 4Å: Chain A: H.111, H.227, H.265 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.111, H2O.2, H2O.5, H2O.5 ZN.7: 5 residues within 4Å: Chain B: H.111, E.175, H.227, H.265 Ligands: ZN.8 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.175, B:E.175, B:H.227, B:H.265, H2O.8 ZN.8: 4 residues within 4Å: Chain B: H.111, H.227, H.265 Ligands: ZN.7 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.111, H2O.8, H2O.11, H2O.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tran, T.H. et al., Apo structure of fructose 1,6-bisphosphate aldolase from Escherichia coli at 1.9 angstrom resolution. To Be Published

Release Date

2017-07-05

Peptides

Fructose-bisphosphate aldolase class 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Fructose-bisphosphate aldolase class 2

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