SMTL ID : 5grn.1

Crystal structure of PDGFRA in Complex with WQ-C-159

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

monomer

Ligands

1 x 748: N-[2-(dimethylamino)ethyl]-N-[[4-[[4-methyl-3-[(4-pyridin-3-ylpyrimidin-2-yl)amino]phenyl]carbamoyl]phenyl]methyl]pyridine-3-carboxamide(Non-covalent)

748.1: 24 residues within 4Å: Chain A: L.54, V.62, A.80, V.81, K.82, E.99, I.102, M.103, L.106, I.112, V.113, I.127, T.129, Y.131, C.132, L.192, C.197, V.198, H.199, L.208, I.217, C.218, D.219, F.220 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:L.54, A:A.80, A:K.82, A:K.82, A:E.99, A:L.106, A:I.112, A:V.113, A:I.127, A:T.129, A:L.192, A:L.208, A:L.208, A:D.219 Hydrogen bonds: A:T.129, A:C.132, A:D.219 Water bridges: A:D.219 Salt bridges: A:D.219 pi-Stacking: A:F.220

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: S.273, P.301, D.302 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: K.78, Y.131, F.133 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: K.235, F.251 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yan, X.E. et al., Crystal Structure of PDGFRA in Complex with WQ-C-159. To Be Published

Release Date

2017-08-16

Peptides

Platelet-derived growth factor receptor alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Platelet-derived growth factor receptor alpha

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