SMTL ID : 6joj.1

Crystal structure of PDGFRA T674I in complex with crenolanib by soaking

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x 6T2: 1-(2-{5-[(3-Methyloxetan-3-yl)methoxy]-1H-benzimidazol-1-yl}quinolin-8-yl)piperidin-4-amine(Non-covalent)

6T2.1: 15 residues within 4Å: Chain A: L.54, A.80, K.82, T.129, E.130, Y.131, C.132, F.133, Y.134, G.135, L.208, D.219, F.220, A.223, R.224 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.54, A:L.54, A:Y.131, A:L.208 Hydrogen bonds: A:C.132

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: R.187, K.342, Y.345, E.346, H.349 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.346 Salt bridges: A:R.187, A:K.342, A:H.349 SO4.3: 3 residues within 4Å: Chain A: H.109, R.187, H.349 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:H.109, A:R.187, A:H.349

7 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 1 residues within 4Å: Chain A: S.325 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Chain A: S.306 Ligand excluded by PLIP CL.6: 1 residues within 4Å: Chain A: D.302 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain A: A.193, T.257, F.326 Ligand excluded by PLIP CL.8: 1 residues within 4Å: Chain A: K.78 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain A: R.187, E.190, Y.327 Ligand excluded by PLIP CL.10: 1 residues within 4Å: Chain A: W.14 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liang, L. et al., Crystal structure of PDGFRA in complex with crenolanib by soaking. To Be Published

Release Date

2020-03-25

Peptides

Platelet-derived growth factor receptor alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Platelet-derived growth factor receptor alpha

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