SMTL ID : 6jol.1

Crystal structure of PDGFRA in complex with imatinib by co-crystallization

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x STI: 4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE(Non-covalent)

STI.1: 19 residues within 4Å: Chain A: L.54, V.62, A.80, V.81, K.82, E.99, M.103, V.113, I.127, T.129, Y.131, C.132, C.197, V.198, H.199, L.208, C.218, D.219, F.220 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:L.54, A:K.82, A:E.99, A:V.113, A:I.127, A:T.129, A:D.219 Hydrogen bonds: A:E.99, A:E.99, A:T.129, A:C.132, A:D.219 Water bridges: A:K.82, A:K.82 Salt bridges: A:D.219, A:D.219 pi-Stacking: A:F.220 pi-Cation interactions: A:K.82, A:H.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liang, L. et al., Crystal structure of PDGFRA in complex with imatinib by co-crystallization. To Be Published

Release Date

2020-03-25

Peptides

Platelet-derived growth factor receptor alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Platelet-derived growth factor receptor alpha

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