SMTL ID : 6jok.1

Crystal structure of PDGFRA in complex with sunitinib by soaking

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.80 Å

Oligo State

monomer

Ligands

1 x B49: N-[2-(diethylamino)ethyl]-5-[(Z)-(5-fluoro-2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]-2,4-dimethyl-1H-pyrrole-3-carbo xamide(Non-covalent)

B49.1: 14 residues within 4Å: Chain A: L.54, V.62, A.80, K.82, V.113, T.129, E.130, Y.131, C.132, F.133, G.135, N.139, L.208, F.220 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.54, A:V.62, A:A.80, A:V.113, A:L.208, A:L.208, A:F.220 Hydrogen bonds: A:E.130, A:C.132, A:C.132

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: H.109, R.187 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: K.342, E.346, H.349 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liang, L. et al., Crystal structure of PDGFRA in complex with sunitinib by soaking. To Be Published

Release Date

2020-03-25

Peptides

Platelet-derived growth factor receptor alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Platelet-derived growth factor receptor alpha

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