- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 16 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 4 residues within 4Å:- Chain A: R.139, V.146, I.147, T.148
Ligand excluded by PLIPSO4.3: 2 residues within 4Å:- Chain A: W.33, R.72
Ligand excluded by PLIPSO4.4: 6 residues within 4Å:- Chain A: R.175, A.239, R.240, A.241, G.242, A.243
Ligand excluded by PLIPSO4.5: 1 residues within 4Å:- Chain A: R.216
Ligand excluded by PLIPSO4.9: 4 residues within 4Å:- Chain B: R.139, V.146, I.147, T.148
Ligand excluded by PLIPSO4.10: 2 residues within 4Å:- Chain B: W.33, R.72
Ligand excluded by PLIPSO4.11: 6 residues within 4Å:- Chain B: R.175, A.239, R.240, A.241, G.242, A.243
Ligand excluded by PLIPSO4.12: 1 residues within 4Å:- Chain B: R.216
Ligand excluded by PLIPSO4.16: 4 residues within 4Å:- Chain C: R.139, V.146, I.147, T.148
Ligand excluded by PLIPSO4.17: 2 residues within 4Å:- Chain C: W.33, R.72
Ligand excluded by PLIPSO4.18: 6 residues within 4Å:- Chain C: R.175, A.239, R.240, A.241, G.242, A.243
Ligand excluded by PLIPSO4.19: 1 residues within 4Å:- Chain C: R.216
Ligand excluded by PLIPSO4.23: 4 residues within 4Å:- Chain D: R.139, V.146, I.147, T.148
Ligand excluded by PLIPSO4.24: 2 residues within 4Å:- Chain D: W.33, R.72
Ligand excluded by PLIPSO4.25: 6 residues within 4Å:- Chain D: R.175, A.239, R.240, A.241, G.242, A.243
Ligand excluded by PLIPSO4.26: 1 residues within 4Å:- Chain D: R.216
Ligand excluded by PLIP- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.6: 7 residues within 4Å:- Chain A: R.100
- Chain C: A.137, D.138, R.139, I.140
- Chain D: R.118, D.122
8 PLIP interactions:5 interactions with chain D, 2 interactions with chain C, 1 interactions with chain A- Hydrogen bonds: D:D.122, C:I.140, C:I.140
- Water bridges: D:R.118, D:D.122, D:D.122, D:R.200, A:R.100
GOL.13: 7 residues within 4Å:- Chain B: R.100
- Chain C: R.118, D.122
- Chain D: A.137, D.138, R.139, I.140
8 PLIP interactions:5 interactions with chain C, 1 interactions with chain B, 2 interactions with chain D- Hydrogen bonds: C:D.122, D:I.140, D:I.140
- Water bridges: C:R.118, C:D.122, C:D.122, C:R.200, B:R.100
GOL.20: 7 residues within 4Å:- Chain A: A.137, D.138, R.139, I.140
- Chain B: R.118, D.122
- Chain C: R.100
7 PLIP interactions:4 interactions with chain B, 2 interactions with chain A, 1 interactions with chain C- Water bridges: B:R.118, B:D.122, B:D.122, B:R.200, C:R.100
- Hydrogen bonds: A:I.140, A:I.140
GOL.27: 7 residues within 4Å:- Chain A: R.118, D.122
- Chain B: A.137, D.138, R.139, I.140
- Chain D: R.100
7 PLIP interactions:4 interactions with chain A, 1 interactions with chain D, 2 interactions with chain B- Water bridges: A:R.118, A:D.122, A:D.122, A:R.200, D:R.100
- Hydrogen bonds: B:I.140, B:I.140
- 4 x 60M: 6-(phosphonomethyl)pyridine-2-carboxylic acid(Non-covalent)
60M.7: 12 residues within 4Å:- Chain A: W.19, H.86, H.88, D.90, H.91, H.162, S.187, S.189, P.191, H.227, A.230
- Ligands: ZN.1
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:S.187, A:S.187, A:S.189, A:H.227
- Water bridges: A:S.189
- pi-Stacking: A:H.227
60M.14: 12 residues within 4Å:- Chain B: W.19, H.86, H.88, D.90, H.91, H.162, S.187, S.189, P.191, H.227, A.230
- Ligands: ZN.8
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:S.187, B:S.187, B:S.189, B:H.227
- Water bridges: B:S.189
- pi-Stacking: B:H.227
60M.21: 12 residues within 4Å:- Chain C: W.19, H.86, H.88, D.90, H.91, H.162, S.187, S.189, P.191, H.227, A.230
- Ligands: ZN.15
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:S.187, C:S.187, C:S.189, C:H.227
- Water bridges: C:S.189
- pi-Stacking: C:H.227
60M.28: 12 residues within 4Å:- Chain D: W.19, H.86, H.88, D.90, H.91, H.162, S.187, S.189, P.191, H.227, A.230
- Ligands: ZN.22
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:S.187, D:S.187, D:S.189, D:H.227
- Water bridges: D:S.189
- pi-Stacking: D:H.227
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hinchliffe, P. et al., Structural and Kinetic Studies of the Potent Inhibition of Metallo-beta-lactamases by 6-Phosphonomethylpyridine-2-carboxylates. Biochemistry (2018)
- Release Date
- 2017-01-18
- Peptides
- Metallo-beta-lactamase L1: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 16 x SO4: SULFATE ION(Non-functional Binders)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 4 x 60M: 6-(phosphonomethyl)pyridine-2-carboxylic acid(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hinchliffe, P. et al., Structural and Kinetic Studies of the Potent Inhibition of Metallo-beta-lactamases by 6-Phosphonomethylpyridine-2-carboxylates. Biochemistry (2018)
- Release Date
- 2017-01-18
- Peptides
- Metallo-beta-lactamase L1: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A