SMTL ID : 5hjs.1

Identification of LXRbeta selective agonists for the treatment of Alzheimer's Disease

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

hetero-2-2-mer

Ligands

2 x 668: 2-chloro-4-{1'-[(2R)-2-hydroxy-3-methyl-2-(trifluoromethyl)butanoyl]-4,4'-bipiperidin-1-yl}-N,N-dimethylbenzamide(Non-covalent)

668.1: 21 residues within 4Å: Chain A: F.90, F.93, T.94, L.96, A.97, S.100, E.103, I.131, M.134, T.138, R.141, F.151, L.152, L.167, F.171, H.257, Q.260, L.264, L.271, L.275, W.279 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.93, A:T.94, A:L.96, A:A.97, A:I.131, A:M.134, A:F.151, A:F.151, A:L.275 Hydrogen bonds: A:L.152 Water bridges: A:K.153 668.2: 19 residues within 4Å: Chain B: F.90, F.93, T.94, L.96, S.100, E.103, I.131, M.134, T.138, R.141, F.151, L.152, L.167, F.171, H.257, Q.260, L.264, L.271, W.279 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:F.90, B:I.131, B:F.151, B:F.151 Hydrogen bonds: B:L.152 Water bridges: B:K.153

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: R.119 Chain C: H.16, Q.20 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:Q.20 Salt bridges: C:H.16, A:R.119 SO4.4: 3 residues within 4Å: Chain B: R.119 Chain D: H.16, Q.20 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain B Hydrogen bonds: D:Q.20 Water bridges: D:H.16 Salt bridges: D:H.16, B:R.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stachel, S.J. et al., Identification and in Vivo Evaluation of Liver X Receptor beta-Selective Agonists for the Potential Treatment of Alzheimer's Disease. J.Med.Chem. (2016)

Release Date

2016-04-06

Peptides

Oxysterols receptor LXR-alpha: AB
Nuclear receptor coactivator 1: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Oxysterols receptor LXR-alpha

Nuclear receptor coactivator 1

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