SMTL ID : 5hn7.1 (3 other biounits)

Crystal structure of Plasmodium vivax geranylgeranylpyrophosphate synthase complexed with BPH-1158

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

2 x 04M: 5-(morpholin-4-ylsulfonyl)-2-{[3-(octyloxy)benzyl]oxy}benzoic acid(Non-covalent)

04M.1: 21 residues within 4Å: Chain A: G.59, K.60, R.63, Q.98, F.101, D.105, M.108, R.114, R.115, T.170, Q.174, T.178, K.222, T.223, Y.226, S.227, F.262, K.280 Chain B: K.129, N.133, L.136 21 PLIP interactions: 20 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:F.101, A:F.101, A:D.105, A:M.108, A:Q.174, A:Q.174, A:T.178, A:K.222, A:K.222, B:L.136 Hydrogen bonds: A:K.60, A:R.63, A:R.63, A:Q.98, A:R.115, A:Q.174, A:Y.226, A:S.227 Water bridges: A:K.60, A:N.61 Salt bridges: A:R.63 04M.2: 20 residues within 4Å: Chain A: N.133, L.136 Chain B: G.59, K.60, R.63, Q.98, A.100, F.101, D.105, R.114, R.115, T.170, I.171, Q.174, K.222, T.223, Y.226, S.227, F.262, Q.263 21 PLIP interactions: 20 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:A.100, B:D.105, B:T.170, B:I.171, B:Q.174, B:Q.174, B:Y.226, B:F.262, A:L.136 Hydrogen bonds: B:K.60, B:K.60, B:R.63, B:R.63, B:Q.98, B:D.105, B:R.115, B:Y.226, B:S.227 Water bridges: B:N.61, B:N.61 Salt bridges: B:R.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

G Ricci, C. et al., Dynamic Structure and Inhibition of a Malaria Drug Target: Geranylgeranyl Diphosphate Synthase. Biochemistry (2016)

Release Date

2016-09-07

Peptides

Farnesyl pyrophosphate synthase, putative: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

Farnesyl pyrophosphate synthase, putative

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