SMTL ID : 5hn8.2 (1 other biounit)

Crystal structure of Plasmodium vivax geranylgeranylpyrophosphate synthase complexed with BPH-1182

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

2 x HXK: 2-{[3-hydroxy-5-(octyloxy)benzyl]sulfanyl}benzoic acid(Non-covalent)

HXK.1: 17 residues within 4Å: Chain A: G.59, K.60, R.63, Q.98, F.101, L.102, A.104, R.114, R.115, T.170, Q.174, K.222, T.223, Y.226, S.227 Chain B: N.133, L.136 16 PLIP interactions: 15 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:F.101, A:F.101, A:F.101, A:L.102, A:A.104, A:T.170, A:Q.174, B:L.136 Hydrogen bonds: A:R.63, A:R.114, A:T.223, A:S.227, A:S.227 Water bridges: A:R.114 Salt bridges: A:K.60 pi-Cation interactions: A:K.60 HXK.2: 15 residues within 4Å: Chain A: N.133, L.136 Chain B: R.63, Q.98, F.101, T.170, Q.174, K.222, T.223, Y.226, G.259, F.262, Q.263, D.266 Ligands: SO4.3 16 PLIP interactions: 15 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:F.101, B:T.170, B:Q.174, B:T.223, B:F.262, B:F.262, B:Q.263, A:L.136 Hydrogen bonds: B:R.63, B:R.63, B:Q.98, B:Y.226 Water bridges: B:K.60, B:K.60 Salt bridges: B:K.60, B:R.63

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain B: G.59, K.60, Q.98, R.115 Ligands: HXK.2 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:K.60, B:N.61, B:Q.98 Water bridges: B:R.63, B:R.63, B:R.63 Salt bridges: B:K.60, B:R.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

G Ricci, C. et al., Dynamic Structure and Inhibition of a Malaria Drug Target: Geranylgeranyl Diphosphate Synthase. Biochemistry (2016)

Release Date

2016-09-07

Peptides

Farnesyl pyrophosphate synthase, putative: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Farnesyl pyrophosphate synthase, putative

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