SMTL ID : 5hn9.1 (1 other biounit)

Crystal structure of Plasmodium vivax geranylgeranylpyrophosphate synthase complexed with BPH-1186

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.12 Å

Oligo State

homo-dimer

Ligands

2 x 04W: 2-{[3-(decyloxy)benzyl]oxy}-5-nitrobenzoic acid(Non-covalent)

04W.1: 22 residues within 4Å: Chain A: G.59, K.60, N.61, R.63, Q.98, F.101, L.102, A.104, D.105, M.108, R.114, R.115, T.170, I.171, Q.174, K.222, Y.226, F.262, D.266, K.280 Chain B: N.133, L.136 16 PLIP interactions: 15 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:F.101, A:F.101, A:L.102, A:A.104, A:T.170, A:I.171, A:Q.174, A:Q.174, A:F.262, B:L.136 Hydrogen bonds: A:R.115, A:K.280 Salt bridges: A:K.60, A:R.114, A:K.280 pi-Cation interactions: A:K.60 04W.2: 20 residues within 4Å: Chain A: N.133, L.136 Chain B: G.59, K.60, R.63, Q.98, F.101, L.102, A.104, D.105, M.108, R.114, R.115, I.171, Q.174, K.222, Y.226, F.262, D.266, K.280 15 PLIP interactions: 14 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:F.101, B:F.101, B:L.102, B:D.105, B:I.171, B:Q.174, B:Q.174, B:F.262, A:L.136 Hydrogen bonds: B:R.115, B:K.280 Salt bridges: B:K.60, B:R.114, B:K.280 pi-Cation interactions: B:K.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

G Ricci, C. et al., Dynamic Structure and Inhibition of a Malaria Drug Target: Geranylgeranyl Diphosphate Synthase. Biochemistry (2016)

Release Date

2016-09-07

Peptides

Farnesyl pyrophosphate synthase, putative: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Farnesyl pyrophosphate synthase, putative

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