SMTL ID : 5hna.1 (1 other biounit)

Crystal structure of Plasmodium vivax geranylgeranylpyrophosphate synthase complexed with BPH-1251

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.69 Å

Oligo State

homo-dimer

Ligands

2 x 63D: 4-chloro-2-{[3-(decyloxy)-5-hydroxybenzyl]oxy}-5-sulfamoylbenzoic acid(Non-covalent)

63D.1: 20 residues within 4Å: Chain A: G.59, K.60, R.63, Q.98, A.100, F.101, L.102, A.104, M.108, R.114, R.115, Y.139, Q.174, K.222, T.223, Y.226, F.262, Q.263 Chain B: N.133, L.136 21 PLIP interactions: 20 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:A.100, A:F.101, A:A.104, A:Y.139, A:K.222, A:F.262, B:L.136 Hydrogen bonds: A:K.60, A:K.60, A:R.63, A:Q.98, A:Q.98, A:R.115, A:Q.263, A:Q.263 Water bridges: A:R.114, A:R.114 Salt bridges: A:R.114, A:R.115, A:K.280 pi-Cation interactions: A:R.63 63D.2: 18 residues within 4Å: Chain A: N.133, L.136 Chain B: G.59, K.60, R.63, Q.98, A.100, F.101, L.102, A.104, M.108, R.114, R.115, Y.139, Q.174, K.222, F.262, Q.263 15 PLIP interactions: 13 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:A.100, B:L.102, B:A.104, B:Y.139, B:K.222, B:F.262, A:L.136, A:L.136 Hydrogen bonds: B:K.60, B:K.60, B:Q.98, B:R.115, B:R.115, B:Q.263 Salt bridges: B:R.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

G Ricci, C. et al., Dynamic Structure and Inhibition of a Malaria Drug Target: Geranylgeranyl Diphosphate Synthase. Biochemistry (2016)

Release Date

2016-09-07

Peptides

Farnesyl pyrophosphate synthase, putative: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Farnesyl pyrophosphate synthase, putative

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