SMTL ID : 5i8p.1 (1 other biounit)

Crystal structure of LP_PLA2 in complex with novel inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.37 Å

Oligo State

monomer

Ligands

1 x VQ7: 6-[1,1-bis(oxidanylidene)-1,4-thiazinan-4-yl]-4-[[4-[4-chloranyl-3-(trifluoromethyl)phenoxy]-3,5-bis(fluoranyl)phenyl]methoxy]-1-methyl-pyrimidin-2-one(Non-covalent)

VQ7.1: 18 residues within 4Å: Chain A: L.66, F.69, L.80, G.111, L.112, G.113, A.114, L.118, Y.119, S.232, F.233, W.257, F.281, H.310, Q.311, A.314, F.316, L.330 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.69, A:A.314, A:F.316, A:L.330 Hydrogen bonds: A:L.112, A:S.232, A:F.233, A:Q.311 pi-Stacking: A:H.310

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Q.F. et al., Structural and Thermodynamic Characterization of Protein-Ligand Interactions Formed between Lipoprotein-Associated Phospholipase A2 and Inhibitors. J.Med.Chem. (2016)

Release Date

2016-06-15

Peptides

Platelet-activating factor acetylhydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Platelet-activating factor acetylhydrolase

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