SMTL ID : 5ye7.2 (1 other biounit)

The crystal structure of Lp-PLA2 in complex with a novel inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

monomer

Ligands

1 x 8U0: N-[4-[(4-naphthalen-2-yloxyphenyl)sulfamoyl]phenyl]ethanamide(Non-covalent)

8U0.1: 15 residues within 4Å: Chain A: L.66, F.69, L.70, G.111, L.112, G.113, A.114, Y.119, H.231, S.232, H.310, Q.311, F.316, L.328, L.330 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.66, A:F.69, A:L.70, A:F.316, A:L.330 Hydrogen bonds: A:L.112, A:Y.119, A:Y.119, A:S.232 Water bridges: A:F.233 pi-Stacking: A:F.69

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: D.48, N.49 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.47, A:N.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Q. et al., Structure-Guided Discovery of Novel, Potent, and Orally Bioavailable Inhibitors of Lipoprotein-Associated Phospholipase A2. J. Med. Chem. (2017)

Release Date

2018-07-25

Peptides

Platelet-activating factor acetylhydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Platelet-activating factor acetylhydrolase

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