SMTL ID : 5yea.1 (1 other biounit)

The crystal structure of Lp-PLA2 in complex with a novel inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: D.48, N.49 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.49 Water bridges: A:S.23, A:S.23 SO4.2: 3 residues within 4Å: Chain A: K.60, G.158, K.160 5 PLIP interactions: 5 interactions with chain A Water bridges: A:E.61, A:K.160, A:K.160 Salt bridges: A:K.60, A:K.160

1 x 8U9: 4-[[4-[4-chloranyl-3-(trifluoromethyl)phenoxy]-3-cyano-phenyl]sulfamoyl]benzoic acid(Non-covalent)

8U9.3: 17 residues within 4Å: Chain A: L.66, F.69, L.70, L.80, G.111, L.112, G.113, A.114, L.118, Y.119, H.231, S.232, Q.311, A.314, D.315, F.316, L.330 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.66, A:F.69, A:L.70, A:A.114, A:L.118, A:Q.311, A:F.316, A:L.330 Hydrogen bonds: A:L.112, A:L.112, A:Y.119, A:H.231, A:S.232, A:F.316 Water bridges: A:F.233 pi-Stacking: A:F.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Q. et al., Structure-Guided Discovery of Novel, Potent, and Orally Bioavailable Inhibitors of Lipoprotein-Associated Phospholipase A2. J. Med. Chem. (2017)

Release Date

2018-07-25

Peptides

Platelet-activating factor acetylhydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Platelet-activating factor acetylhydrolase

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